vitesse_loading.py

Loading data from Nu Instruments.

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Functions

Function	Signature	Description
is_nu_run_info_file	(path: Path) → bool	Check if file exists and is called 'run.info'.
is_nu_directory	(path: Path) → bool	Check if path is a directory containing 'run.info' and 'integrated.index'.
blank_nu_signal_data	(autob_events: list[np.ndarray], signals: np.ndarray, masses: np.ndarr	Apply auto-blanking to the integrated data.
collect_nu_autob_data	(root: Path, index: list[dict], cyc_number: int \| None=None, seg_numbe	Collect Nu autoblank data from multiple files.
collect_nu_integ_data	(root: Path, index: list[dict], cyc_number: int \| None=None, seg_numbe	Collect Nu integrated data from multiple files.
get_dwelltime_from_info	(info: dict) → float	Read the dwell time (total acquisition time) from run.info.
get_signals_from_nu_data	(integs: list[np.ndarray], num_acc: int) → np.ndarray	Convert signals from integ data to counts.
get_masses_from_nu_data	(integ: np.ndarray, cal_coef: tuple[float, float], segment_delays: dic	Convert Nu peak centers into masses.
read_nu_autob_binary	(path: Path, first_cyc_number: int \| None=None, first_seg_number: int	Read Nu autoblank binary file.
read_nu_integ_binary	(path: Path, first_cyc_number: int \| None=None, first_seg_number: int	Read Nu integrated binary file.
read_nu_directory	(path: str \| Path, max_integ_files: int \| None=None, autoblank: bool=T	Read the Nu Instruments raw data directory, returning data and run info.
select_nu_signals	(masses: np.ndarray, signals: np.ndarray, selected_masses: dict[str, f	Reduce signals to the isotopes in selected_masses.
single_ion_distribution	(counts: np.ndarray, bins: str \| int \| np.ndarray='auto') → np.ndarray	Calculate the single ion distribution from calibration data.